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Towson - MBBB 301 - Class Notes - Week 5

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Towson - MBBB 301 - Class Notes - Week 5

School: Towson University
Department: Biology
Course: Intro to Bioinformatics
Professor: Alkharouf
Term: Fall 2015
Tags:
Name: Bioinformatics week 5
Description: Lecture 5 notes
Uploaded: 03/05/2018
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School: Towson University
Department: Biology
Course: Intro to Bioinformatics
Professor: Alkharouf
Term: Fall 2015
Tags:
Name: Bioinformatics week 5
Description: Lecture 5 notes
Uploaded: 03/05/2018
2 Pages 48 Views 38 Unlocks
  • Better Grades Guarantee
  • 24/7 Homework help
  • Notes, Study Guides, Flashcards + More!

Unformatted text preview: Similar in length (homologous Gwys to +tansiale deler - Global extends from one end of sequence to other - local finds optimaly muching regions within 2 sequences (subsequences) L> usualy used for BLA T, good for finding domains or motifs - dois means / mismatch but still similar - Colon means Lecture 5 Bost (basic local Alignment Search tool _ fast, accurate, accesible on web A pplications - identifying orthopu rer1 095 - discovering new genes proteins of variants come fom cDNA(coding (400) - (nu es nigthing expressed' Sequence tags (ESTS) - exploring protein SHucture and functi on - 4 componenti choose sequence (quer) > be input in FASTA format of alession #. 2) Select blast program > blastn, blast p , t blasen, blastx, tblastx (E>>tons la lor) 3) Choose database to search 4) choose optional parum e hers Inpet Database 2), blast DNA L> DNA + G protein. Se queres per bloste protein J > protein from DNA blosty ONA S > protein tHasen Protein LASTY DN (used if blast P fads, I plotein >> 6. DNA segumcas) DNA E L 53 DNA -> Searches all (smettons of input mth de 6 trans indb 3) NFNon edun du ni- (most general) db est >> db of Segrenet tvgs d bsts db of soquence tag sites hrgs -> high through pat geronic sequence most Important on examut Bu a) <>Uw 3y5yO+ S HOMI LA GVEH 42stih vp02 a v se uw = 3 - voy) kg humo ano yuf S 905 stua vauby yo H 3*qumus-anjon 3. Qt Imba Jo Hat Yamrab S3J005 stva u bilo ombes - Suoduosad - - Graphic alighment views + formeting peadeles - Change oviput first - Change word size - change the except value *4ow voyyntity a bunur - - tuen filtering om Joer 4) - Cheese organism to Sedrich

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